| Name | Version | Summary | date |
| snpio |
1.5.15 |
SNPio is a Python API for population genetic file processing, filtering, and analysis. It is designed to be a user-friendly tool for the manipulation of population genetic data in a variety of formats. SNPio can be used to filter data based on missingness, MAF and MAC, singletons, biallelic, and monomorphic sites. It can also generate summary statistics for population genetic analyses. |
2025-07-08 18:51:28 |
| bacformer |
0.1.0 |
Modeling bacterial genomes. |
2025-07-08 16:22:51 |
| abcoder |
0.2.0 |
Agentic bioinformatics coder |
2025-07-08 12:36:46 |
| crisprzip |
1.2.0 |
A kinetic model of CRISPR-Cas target recognition. |
2025-07-08 11:13:14 |
| molactivity |
3.0 |
Molecular activity prediction using transformer neural networks with 5 operational modes |
2025-07-08 10:37:02 |
| nf-core |
3.3.2 |
Helper tools for use with nf-core Nextflow pipelines. |
2025-07-08 09:51:27 |
| resdk |
22.0.0 |
Resolwe SDK for Python |
2025-04-01 07:43:06 |
| instanovo |
1.1.0 |
InstaNovo enables diffusion-powered de novo peptide sequencing in large scale proteomics experiments |
2025-03-28 12:09:51 |
| refget |
0.8.0 |
Python client for refget |
2025-03-11 21:31:04 |
| spatools |
0.0.65 |
This comprehensive toolkit enables the analysis of multiple spatial transcriptomics datasets, offering a wide range of analytical capabilities. It supports various types of analyses, including detailed plotting and advanced image analysis, to help you gain deeper insights into your spatial transcriptomics data. |
2025-03-11 05:09:49 |
| mhctyper |
0.1.3 |
MHC Class I and II typer based on polysolver algorithm. |
2025-02-26 19:32:51 |
| mach2 |
1.0.0 |
Migration Analysis of Clonal History 2 |
2025-02-25 16:39:53 |
| kneaddata |
0.12.2 |
None |
2025-02-25 01:00:38 |
| pyhpo |
3.3.2 |
A Python package to work with the HPO Ontology |
2025-02-23 12:08:22 |
| STMiner |
0.0.8 |
Python package for spatial transcriptomics data analysis |
2025-02-22 16:26:16 |
| hpo3 |
1.4.0 |
A Python package to work with the HPO Ontology using a Rust backend for faster performance |
2025-02-22 10:37:49 |
| plink-bed-reader |
1.0.2 |
Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in pure Python. |
2025-02-21 12:29:28 |
| ccompass |
2.0.0a1 |
C-COMPASS (Cellular COMPartmentclASSifier) is an advanced open-source software tool designed for the quantitative analysis of fractionated proteomics samples. |
2025-02-20 10:58:31 |
| alphamap |
0.1.13 |
None |
2025-02-19 21:30:28 |
| scanRBP |
0.3 |
scanRBP: RNA-protein binding toolkit |
2025-02-19 15:05:30 |